rs4220662 SNP Detail

Summary

• ID
  rs4220662
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:94352377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGTTTGTA GTTTAGGATA
  ACCTTGAACT CAAAAATCCT TGTGCCTCGG CCTTCTGAAT TATAGTTGTT TTTCATTGTG
  GCAGTGGCTC TTTGTTTGTT TTGAAACAGG GTTTCTCTAT GTAGCCCACA GGCTGTCCAG
  GAACTCAGAG ACCTGGCTGC CTTTGCTCTG ATGACTGGGA TAAAGGTGTG ACCCCCCCCC
  M
  CACACACACA CACACCCATC CCATCCCAGG TATTTTTATT TGTGGTTGGC TATATTGTGT
  TGCCTCTTAG AAAAAATATT TTGGGGGTCT GGGATATAGC TCTTTAAGCC AACGTCAACG
  TCAGTCAGTT AAATAGTATG GTCAAGACTA CATAAGACCT TGTCTCAAAA AAGAAAAAAG
  AAAAGAAACT TGATTTCTAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6383455	mCV22922541_92639319	CRAMUS	CRAMUS_MOUSE	f	SNP	C	C	A	A
ss39433001	mCV22922541	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	A
ss148580895	ENSMUSSNP3438770	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4220662					SNP	C	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:94352377 () rs orientation: forward

Symbol	Name	Function Class
Gm56630	predicted gene, 56630	696 bp upstream
Rr328341	regulatory region 328341	424 bp proximal
Rr392165	regulatory region 392165	within coordinates
Tssr139557	transcription start site region 139557	692 bp upstream