rs4220673 SNP Detail

Summary

• ID
  rs4220673
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:94523798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGT GCAAGGGTGC ACGCTCTCAA
  S
  GAAGGGCCCA GTAACAGCGC CCAGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss6383466	mCV23417065_92810481	CRAMUS	CRAMUS_MOUSE	f	SNP	G	G	C					C		C
ss39426713	mCV23417065	ABI	CRAMUS_MOUSE	f	SNP	G	G	C					C		C
ss60514130	NES16533872	PERLEGEN	MM_PANEL2	f	SNP	G		C	G	C	C	C		C	C	G	G		C	G	C	C		C
ss148581103	ENSMUSSNP5064246	ENSEMBL	ENSEMBL_Sanger	f	SNP			C							C
ss325281653	CHEV_16_94944546	CHEVERUD	SCREENING_POP	f	SNP													G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs4220673					SNP	G	G	C	G	C	C	C	C	C	C	G	G	G	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60514130	NES16533872	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:94523798 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8506	CpG island 8506	1262 bp proximal
Gm41505	predicted gene, 41505	within coordinates
Gm41507	predicted gene, 41507	388 bp downstream
Rr1836	regulatory region 1836	215 bp proximal
Rr520192	regulatory region 520192	867 bp distal
Rr520193	regulatory region 520193	within coordinates
Rr520194	regulatory region 520194	916 bp proximal
Tssr139566	transcription start site region 139566	1039 bp downstream
Tssr139567	transcription start site region 139567	971 bp downstream
Tssr139568	transcription start site region 139568	948 bp downstream
Tssr139569	transcription start site region 139569	1547 bp upstream