rs4221643 SNP Detail

Summary

• ID
  rs4221643
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:97336886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGG GACCCAGAAG GGCTGGCAGG
  R
  CTCCTCAGTG ATTCCTGGTA TGGTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6384521	mCV23400807_95596548	CRAMUS	CRAMUS_MOUSE	f	SNP	G	A	G
ss39465739	mCV23400807	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss148593783	ENSMUSSNP1007768	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss325284545	CHEV_16_97757293	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4221643					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:97336886 () rs orientation: forward

Symbol	Name	Function Class
Mx2	MX dynamin-like GTPase 2	395 bp upstream
Rr325652	regulatory region 325652	within coordinates
Tssr139688	transcription start site region 139688	367 bp downstream
Tssr139689	transcription start site region 139689	393 bp upstream
Tssr139690	transcription start site region 139690	652 bp upstream