A CGATGGTCAA ATACGACGAT S TTTTATCTCA AATACGGCGA TTTTTTATCT CAAATACGAC GATTTTTTAT CTCAAATACG TCGATTTTTT TATCTCAAAT ACGGCGTCGA ATGGTAGGGT AGAGGAAACC TCCCAAGCTG GCCTCTGGTC TCGACGTGCG GGTGTTTGCA CACATGCCAC ACACAGGTGC TCGCACCCTT GCCACACACA AAAGTGTGCA TGTTACAACC GGGGAGCAAC GACGCAGGTC TTTACACTTG TTCCCAGCGG TTTGCAGAGA AGAGCAGGTG CACGGAGTGA TCCTCTAGTT CCGTTTTCTT TTCCAAGTAG S = C/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129/Sv |
A/J |
BALB/cByJ |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
SPRET/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss6384870 | AA259483_22 | TWGNF | TWGNF-Mouse | f | SNP | G | G | G | G | G | G | G | C |
SNP Consensus Information | |||||||||||||
SNP | Consensus Type | 129/Sv |
A/J |
BALB/cByJ |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
SPRET/EiJ |
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rs4221919 | SNP | G | G | G | G | G | G | G | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss6384870 | AA259483_22 | TWGNF | TWGNF-Mouse-2 | f | SNP | C/G |
Location: Chr1:93728288 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi608 | CpG island 608 | 1039 bp proximal | ||||||
Dtymk | deoxythymidylate kinase | within coordinates | ||||||
Gm70929 | predicted gene, 70929 | 1422 bp upstream | ||||||
Rr29859 | regulatory region 29859 | 112 bp proximal | ||||||
Rr366972 | regulatory region 366972 | 1215 bp upstream | ||||||
Tssr8200 | transcription start site region 8200 | 1585 bp upstream | ||||||
Tssr13051 | transcription start site region 13051 | 1196 bp upstream | ||||||
Tssr13052 | transcription start site region 13052 | 1274 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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