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rs4221920 SNP Detail
Summary
  • ID
    rs4221920
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr1:93728292 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          ACGAT GGTCAAATAC GACGATGTTT
    K
    ATCTCAAATA CGGCGATTTT TTATCTCAAA TACGACGATT TTTTATCTCA AATACGTCGA
    TTTTTTTATC TCAAATACGG CGTCGAATGG TAGGGTAGAG GAAACCTCCC AAGCTGGCCT
    CTGGTCTCGA CGTGCGGGTG TTTGCACACA TGCCACACAC AGGTGCTCGC ACCCTTGCCA
    CACACAAAAG TGTGCATGTT ACAACCGGGG AGCAACGACG CAGGTCTTTA CACTTGTTCC
    CAGCGGTTTG CAGAGAAGAG CAGGTGCACG GAGTGATCCT CTAGTTCCGT TTTCTTTTCC
    AAGTAG                                                           
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129/Sv
A/J
BALB/cByJ
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
SPRET/EiJ
ss6384871 AA259483_26 TWGNF TWGNF-Mouse f SNP T T T T T T T G
SNP Consensus Information
SNP Consensus Type
129/Sv
A/J
BALB/cByJ
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
SPRET/EiJ
rs4221920 SNP T T T T T T T G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss6384871 AA259483_26 TWGNF TWGNF-Mouse-2 f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:93728292 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi608 CpG island 608 1035 bp proximal
Dtymk deoxythymidylate kinase within coordinates
Gm70929 predicted gene, 70929 1418 bp upstream
Rr29859 regulatory region 29859 108 bp proximal
Rr366972 regulatory region 366972 1211 bp upstream
Tssr8200 transcription start site region 8200 1581 bp upstream
Tssr13051 transcription start site region 13051 1200 bp upstream
Tssr13052 transcription start site region 13052 1270 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory