ACGATGGT CAAATACGAC GATGTTTTAT CTCAAATACG R CGATTTTTTA TCTCAAATAC GACGATTTTT TATCTCAAAT ACGTCGATTT TTTTATCTCA AATACGGCGT CGAATGGTAG GGTAGAGGAA ACCTCCCAAG CTGGCCTCTG GTCTCGACGT GCGGGTGTTT GCACACATGC CACACACAGG TGCTCGCACC CTTGCCACAC ACAAAAGTGT GCATGTTACA ACCGGGGAGC AACGACGCAG GTCTTTACAC TTGTTCCCAG CGGTTTGCAG AGAAGAGCAG GTGCACGGAG TGATCCTCTA GTTCCGTTTT CTTTTCCAAG TAG R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129/Sv |
A/J |
BALB/cByJ |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
SPRET/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss6384872 | AA259483_39 | TWGNF | TWGNF-Mouse | f | SNP | G | G | G | G | G | G | G | A |
SNP Consensus Information | |||||||||||||
SNP | Consensus Type | 129/Sv |
A/J |
BALB/cByJ |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
SPRET/EiJ |
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rs4221921 | SNP | G | G | G | G | G | G | G | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss6384872 | AA259483_39 | TWGNF | TWGNF-Mouse-2 | f | SNP | A/G |
Location: Chr1:93728305 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi608 | CpG island 608 | 1022 bp proximal | ||||||
Dtymk | deoxythymidylate kinase | within coordinates | ||||||
Gm70929 | predicted gene, 70929 | 1405 bp upstream | ||||||
Rr29859 | regulatory region 29859 | 95 bp proximal | ||||||
Rr366972 | regulatory region 366972 | 1198 bp upstream | ||||||
Tssr8200 | transcription start site region 8200 | 1568 bp upstream | ||||||
Tssr13051 | transcription start site region 13051 | 1213 bp upstream | ||||||
Tssr13052 | transcription start site region 13052 | 1257 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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