rs4221922 SNP Detail

Summary

• ID
  rs4221922
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  111
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:93728306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                         ACGATGGTC AAATACGACG ATGTTTTATC TCAAATACGG
  Y
  GATTTTTTAT CTCAAATACG ACGATTTTTT ATCTCAAATA CGTCGATTTT TTTATCTCAA
  ATACGGCGTC GAATGGTAGG GTAGAGGAAA CCTCCCAAGC TGGCCTCTGG TCTCGACGTG
  CGGGTGTTTG CACACATGCC ACACACAGGT GCTCGCACCC TTGCCACACA CAAAAGTGTG
  CATGTTACAA CCGGGGAGCA ACGACGCAGG TCTTTACACT TGTTCCCAGC GGTTTGCAGA
  GAAGAGCAGG TGCACGGAGT GATCCTCTAG TTCCGTTTTC TTTTCCAAGT AG        
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6384873	AA259483_40	TWGNF	TWGNF-Mouse	f	SNP	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4221922					SNP	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6384873	AA259483_40	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:93728306 () rs orientation: forward

Symbol	Name	Function Class
Cpgi608	CpG island 608	1021 bp proximal
Dtymk	deoxythymidylate kinase	within coordinates
Gm70929	predicted gene, 70929	1404 bp upstream
Rr29859	regulatory region 29859	94 bp proximal
Rr366972	regulatory region 366972	1197 bp upstream
Tssr8200	transcription start site region 8200	1567 bp upstream
Tssr13051	transcription start site region 13051	1214 bp upstream
Tssr13052	transcription start site region 13052	1256 bp downstream