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rs4221923 SNP Detail
Summary
  • ID
    rs4221923
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr1:93728312 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                    ACGAT GGTCAAATAC GACGATGTTT TATCTCAAAT ACGGCGATTT
    W
    TTATCTCAAA TACGACGATT TTTTATCTCA AATACGTCGA TTTTTTTATC TCAAATACGG
    CGTCGAATGG TAGGGTAGAG GAAACCTCCC AAGCTGGCCT CTGGTCTCGA CGTGCGGGTG
    TTTGCACACA TGCCACACAC AGGTGCTCGC ACCCTTGCCA CACACAAAAG TGTGCATGTT
    ACAACCGGGG AGCAACGACG CAGGTCTTTA CACTTGTTCC CAGCGGTTTG CAGAGAAGAG
    CAGGTGCACG GAGTGATCCT CTAGTTCCGT TTTCTTTTCC AAGTAG               
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129/Sv
A/J
BALB/cByJ
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
SPRET/EiJ
ss6384874 AA259483_46 TWGNF TWGNF-Mouse f SNP T T T T T T T A
SNP Consensus Information
SNP Consensus Type
129/Sv
A/J
BALB/cByJ
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
SPRET/EiJ
rs4221923 SNP T T T T T T T A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss6384874 AA259483_46 TWGNF TWGNF-Mouse-2 f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:93728312 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi608 CpG island 608 1015 bp proximal
Dtymk deoxythymidylate kinase within coordinates
Gm70929 predicted gene, 70929 1398 bp upstream
Rr29859 regulatory region 29859 88 bp proximal
Rr366972 regulatory region 366972 1191 bp upstream
Tssr8200 transcription start site region 8200 1561 bp upstream
Tssr13051 transcription start site region 13051 1220 bp upstream
Tssr13052 transcription start site region 13052 1250 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory