ACGATGG TCAAATACGA CGATGTTTTA TCTCAAATAC GGCGATTTTT K ATCTCAAATA CGACGATTTT TTATCTCAAA TACGTCGATT TTTTTATCTC AAATACGGCG TCGAATGGTA GGGTAGAGGA AACCTCCCAA GCTGGCCTCT GGTCTCGACG TGCGGGTGTT TGCACACATG CCACACACAG GTGCTCGCAC CCTTGCCACA CACAAAAGTG TGCATGTTAC AACCGGGGAG CAACGACGCA GGTCTTTACA CTTGTTCCCA GCGGTTTGCA GAGAAGAGCA GGTGCACGGA GTGATCCTCT AGTTCCGTTT TCTTTTCCAA GTAG K = G/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129/Sv |
A/J |
BALB/cByJ |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
SPRET/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss6384875 | AA259483_48 | TWGNF | TWGNF-Mouse | f | SNP | T | T | T | T | T | T | T | G |
SNP Consensus Information | |||||||||||||
SNP | Consensus Type | 129/Sv |
A/J |
BALB/cByJ |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
SPRET/EiJ |
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rs4221924 | SNP | T | T | T | T | T | T | T | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss6384875 | AA259483_48 | TWGNF | TWGNF-Mouse-2 | f | SNP | G/T |
Location: Chr1:93728314 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi608 | CpG island 608 | 1013 bp proximal | ||||||
Dtymk | deoxythymidylate kinase | within coordinates | ||||||
Gm70929 | predicted gene, 70929 | 1396 bp upstream | ||||||
Rr29859 | regulatory region 29859 | 86 bp proximal | ||||||
Rr366972 | regulatory region 366972 | 1189 bp upstream | ||||||
Tssr8200 | transcription start site region 8200 | 1559 bp upstream | ||||||
Tssr13051 | transcription start site region 13051 | 1222 bp upstream | ||||||
Tssr13052 | transcription start site region 13052 | 1248 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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