rs4221926 SNP Detail

Summary

• ID
  rs4221926
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:93728359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTCAGGAC TGTTATGTAG
  GGAAACCTAG TATCAAAAAA ACAAAACCAA AAACCAAATC AAAAAAAAAA CCTTTTAATA
  AAACAAAACA AGCCGGATGT GGTTAAATAC GATGGTCAAA TACGACGATG TTTTATCTCA
  AATACGGCGA TTTTTTATCT CAAATACGAC GATTTTTTAT CTCAAATACG TCGATTTTTT
  W
  ATCTCAAATA CGGCGTCGAA TGGTAGGGTA GAGGAAACCT CCCAAGCTGG CCTCTGGTCT
  CGACGTGCGG GTGTTTGCAC ACATGCCACA CACAGGTGCT CGCACCCTTG CCACACACAA
  AAGTGTGCAT GTTACAACCG GGGAGCAACG ACGCAGGTCT TTACACTTGT TCCCAGCGGT
  TTGCAGAGAA GAGCAGGTGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6384877	AA259483_93	TWGNF	TWGNF-Mouse	f	SNP	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4221926					SNP	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6384877	AA259483_93	TWGNF	TWGNF-Mouse-2	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:93728359 () rs orientation: forward

Symbol	Name	Function Class
Cpgi608	CpG island 608	968 bp proximal
Dtymk	deoxythymidylate kinase	within coordinates
Gm70929	predicted gene, 70929	1351 bp upstream
Rr29859	regulatory region 29859	41 bp proximal
Rr366972	regulatory region 366972	1144 bp upstream
Tssr8200	transcription start site region 8200	1514 bp upstream
Tssr13051	transcription start site region 13051	1267 bp upstream
Tssr13052	transcription start site region 13052	1203 bp downstream