rs4222050 SNP Detail

Summary

• ID
  rs4222050
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88863547 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGCGC TTGAGCTCCC ACACCGTGCT
  Y
  GACTCCTTGG CATCAGTGAA GATGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	SM/J	SPRET/EiJ
ss6385008	C76890.1_111	TWGNF	TWGNF-Mouse	f	SNP	C			C	C	C	T	C			C
ss38669735	mCV24310057	ABI	CRAMUS_MOUSE	r	SNP		G	G			A		G
ss132548876	ENSMUSSNP4214899	ENSEMBL	ENSEMBL_Sanger	r	SNP			G					G
ss323783382	CHEV_11_88834035	CHEVERUD	SCREENING_POP	r	SNP									G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	SM/J	SPRET/EiJ
rs4222050					SNP	C	C	C	C	C	?	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6385008	C76890.1_111	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88863547 () rs orientation: reverse

Symbol	Name	Function Class
2210409E12Rik	RIKEN cDNA 2210409E12 gene	within coordinates
Coil	coilin	1214 bp upstream
Cpgi3523	CpG island 3523	1025 bp proximal
Gm10367	predicted gene 10367	within coordinates
Rr237596	regulatory region 237596	1147 bp distal
Rr247482	regulatory region 247482	653 bp proximal
Tssr104059	transcription start site region 104059	1198 bp upstream
Tssr104060	transcription start site region 104060	1207 bp upstream