rs4222051 SNP Detail

Summary

• ID
  rs4222051
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88863540 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GAGCT CCCACACCGT GCTTGACTCC
  W
  TGGCATCAGT GAAGATGGTG GTCTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss6385009	C76890.1_118	TWGNF	TWGNF-Mouse	f	SNP	A					A	A	T						T					A																					T
ss16379675	C11.095.600	TWGNF	TWGNF-Mouse-2	f	SNP		A	A	A	A	A	A	T	T	A	T	T	T	T	A	A	T	A	A	T	A	A	T	A	T	A	T	T	T	A	A	T	A	T	A	A	T	A	A	T	A	A	A	T
ss38853685	mCV24310047	ABI	CRAMUS_MOUSE	r	SNP		T	T					A											T
ss132548872	ENSMUSSNP5714728	ENSEMBL	ENSEMBL_Sanger	r	SNP			T																T
ss323783381	CHEV_11_88834028	CHEVERUD	SCREENING_POP	r	SNP																									A														T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs4222051					SNP	A	A	A	A	A	A	A	T	T	A	T	T	T	T	A	A	T	A	A	T	A	A	T	A	T	A	T	T	T	A	A	T	A	T	A	A	T	A	A	T	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6385009	C76890.1_118	TWGNF	TWGNF-Mouse-2	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88863540 () rs orientation: reverse

Symbol	Name	Function Class
2210409E12Rik	RIKEN cDNA 2210409E12 gene	within coordinates
Coil	coilin	1221 bp upstream
Cpgi3523	CpG island 3523	1032 bp proximal
Gm10367	predicted gene 10367	within coordinates
Rr237596	regulatory region 237596	1140 bp distal
Rr247482	regulatory region 247482	660 bp proximal
Tssr104059	transcription start site region 104059	1205 bp upstream
Tssr104060	transcription start site region 104060	1214 bp upstream