rs4222054 SNP Detail

Summary

• ID
  rs4222054
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:27385061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCT GGTTGGATGC TGAGACACCA
  R
  GACTTTTCAA ATCTCTCAGC TTCGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss6385012	AI836553.1_79	TWGNF	TWGNF-Mouse	f	SNP	G			G		G			G	A											G
ss16379944	12.021.787	TWGNF	TWGNF-Mouse-2	f	SNP		G	G	G	G	G	G	G	G	A	A	A	G	G	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	A	A	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G
ss38964576	mCV22641562	ABI	CRAMUS_MOUSE	f	SNP		G	G	G						A											G
ss137464391	ENSMUSSNP6129852	ENSEMBL	ENSEMBL_Sanger	f	SNP			G	G																	G
ss323959671	CHEV_12_28019927	CHEVERUD	SCREENING_POP	f	SNP																											G																	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs4222054					SNP	G	G	G	G	G	G	G	G	G	A	A	A	G	G	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	A	A	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6385012	AI836553.1_79	TWGNF	TWGNF-Mouse-2	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:27385061 () rs orientation: forward

Symbol	Name	Function Class
Rr464223	regulatory region 464223	1075 bp distal
Rr464224	regulatory region 464224	191 bp proximal
Rr464225	regulatory region 464225	1850 bp proximal
Sox11	SRY (sex determining region Y)-box 11	within coordinates
Tssr113042	transcription start site region 113042	1151 bp upstream
Tssr113043	transcription start site region 113043	1307 bp upstream
Tssr115960	transcription start site region 115960	283 bp upstream
Tssr115961	transcription start site region 115961	74 bp downstream
Tssr115962	transcription start site region 115962	512 bp downstream
Tssr115963	transcription start site region 115963	991 bp downstream
Tssr115964	transcription start site region 115964	1342 bp downstream
Tssr115965	transcription start site region 115965	1405 bp downstream
Tssr115966	transcription start site region 115966	1494 bp downstream
Tssr115967	transcription start site region 115967	1766 bp downstream
Tssr115968	transcription start site region 115968	1780 bp downstream
Tssr115969	transcription start site region 115969	1857 bp downstream
Tssr115970	transcription start site region 115970	1882 bp downstream
Tssr115971	transcription start site region 115971	1925 bp downstream