rs4222249 SNP Detail

Summary

• ID
  rs4222249
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  111
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:34484413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                       AAGGGC CTCAAGAGGC TGTGCCACAG
  Y
  CGTTTGCAAC TTACTGTCCT CTCTGTATCC AAAACCCTGA ACTTCCCCAA GGGCCCTGGG
  TTTGTATAGA GTGGTTGTCA AGACCCTAGA GCTCGCAGAG AGAATTGGTG ATGGGATCTA
  CCATACCATT AGGAGGAGGC CTCTGAGGAA GCATGCCAGA CAGGATAAGG GAGATGTCTG
  CATGGTGTCA TGAAAACCTA ACGATAGTGA GAGAACAGAA GCCATCTGGA TGATGTGCAA
  GGCCCTTGAG GTCCAATAAG ATGAGGAAGG TTAGGCCAGT GCTCTGGGAC GGGTGGGCCC
  ACAACTGCAG CTCATGAATC CAATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6385211	AV031295_27	TWGNF	TWGNF-Mouse	f	SNP	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4222249					SNP	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6385211	AV031295_27	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:34484413 () rs orientation: forward

Symbol	Name	Function Class
D1Ertd448e	DNA segment, Chr 1, ERATO Doi 448, expressed	461 bp upstream
Gm28306	predicted gene 28306	602 bp upstream
Imp4	IMP4, U3 small nucleolar ribonucleoprotein	within coordinates
Rr15762	regulatory region 15762	1813 bp distal
Tssr6216	transcription start site region 6216	1446 bp downstream
Tssr6217	transcription start site region 6217	428 bp downstream
Tssr6218	transcription start site region 6218	1699 bp upstream