rs4222252 SNP Detail

Summary

• ID
  rs4222252
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  111
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:34484469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                           AA GGGCCTCAAG AGGCTGTGCC
  ACAGCCGTTT GCAACTTACT GTCCTCTCTG TATCCAAAAC CCTGAACTTC CCCAAGGGCC
  Y
  TGGGTTTGTA TAGAGTGGTT GTCAAGACCC TAGAGCTCGC AGAGAGAATT GGTGATGGGA
  TCTACCATAC CATTAGGAGG AGGCCTCTGA GGAAGCATGC CAGACAGGAT AAGGGAGATG
  TCTGCATGGT GTCATGAAAA CCTAACGATA GTGAGAGAAC AGAAGCCATC TGGATGATGT
  GCAAGGCCCT TGAGGTCCAA TAAGATGAGG AAGGTTAGGC CAGTGCTCTG GGACGGGTGG
  GCCCACAACT GCAGCTCATG AATCCAATT                                  
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6385214	AV031295_83	TWGNF	TWGNF-Mouse	f	SNP	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4222252					SNP	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6385214	AV031295_83	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:34484469 () rs orientation: forward

Symbol	Name	Function Class
D1Ertd448e	DNA segment, Chr 1, ERATO Doi 448, expressed	405 bp upstream
Gm28306	predicted gene 28306	658 bp upstream
Imp4	IMP4, U3 small nucleolar ribonucleoprotein	within coordinates
Rr15762	regulatory region 15762	1869 bp distal
Tssr6216	transcription start site region 6216	1502 bp downstream
Tssr6217	transcription start site region 6217	484 bp downstream
Tssr6218	transcription start site region 6218	1643 bp upstream