rs4222256 SNP Detail

Summary

• ID
  rs4222256
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:34484540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATGGGCCT GTCCATCAGC
  CACAGGGAGA GCTAGTGTTG CCCAGGGAAG GGCCTCAAGA GGCTGTGCCA CAGCCGTTTG
  CAACTTACTG TCCTCTCTGT ATCCAAAACC CTGAACTTCC CCAAGGGCCC TGGGTTTGTA
  TAGAGTGGTT GTCAAGACCC TAGAGCTCGC AGAGAGAATT GGTGATGGGA TCTACCATAC
  M
  ATTAGGAGGA GGCCTCTGAG GAAGCATGCC AGACAGGATA AGGGAGATGT CTGCATGGTG
  TCATGAAAAC CTAACGATAG TGAGAGAACA GAAGCCATCT GGATGATGTG CAAGGCCCTT
  GAGGTCCAAT AAGATGAGGA AGGTTAGGCC AGTGCTCTGG GACGGGTGGG CCCACAACTG
  CAGCTCATGA ATCCAATTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss6385218	AV031295_154	TWGNF	TWGNF-Mouse	f	SNP	A			C		C			C	C	C							A
ss51237432	NES14285402	PERLEGEN	MM_PANEL2	f	SNP		A		C	C	C	A	C		C	C	C	A	C	C	C	C		A
ss148888910	ENSMUSSNP2158640	ENSEMBL	ENSEMBL_Sanger	f	SNP			A	C							C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs4222256					SNP	A	A	A	C	C	C	A	C	C	C	C	C	A	C	C	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6385218	AV031295_154	TWGNF	TWGNF-Mouse-2	f	SNP	A/C
ss51237432	NES14285402	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:34484540 () rs orientation: forward

Symbol	Name	Function Class
D1Ertd448e	DNA segment, Chr 1, ERATO Doi 448, expressed	334 bp upstream
Gm28306	predicted gene 28306	729 bp upstream
Imp4	IMP4, U3 small nucleolar ribonucleoprotein	within coordinates
Rr15762	regulatory region 15762	1940 bp distal
Tssr6216	transcription start site region 6216	1573 bp downstream
Tssr6217	transcription start site region 6217	555 bp downstream
Tssr6218	transcription start site region 6218	1572 bp upstream