rs4222257 SNP Detail

Summary

• ID
  rs4222257
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:34484565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAGCTAG TGTTGCCCAG
  GGAAGGGCCT CAAGAGGCTG TGCCACAGCC GTTTGCAACT TACTGTCCTC TCTGTATCCA
  AAACCCTGAA CTTCCCCAAG GGCCCTGGGT TTGTATAGAG TGGTTGTCAA GACCCTAGAG
  CTCGCAGAGA GAATTGGTGA TGGGATCTAC CATACCATTA GGAGGAGGCC TCTGAGGAAG
  Y
  ATGCCAGACA GGATAAGGGA GATGTCTGCA TGGTGTCATG AAAACCTAAC GATAGTGAGA
  GAACAGAAGC CATCTGGATG ATGTGCAAGG CCCTTGAGGT CCAATAAGAT GAGGAAGGTT
  AGGCCAGTGC TCTGGGACGG GTGGGCCCAC AACTGCAGCT CATGAATCCA ATTCTCAACA
  AGGCCTCTGG GATCCTCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6385219	AV031295_179	TWGNF	TWGNF-Mouse	f	SNP	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4222257					SNP	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6385219	AV031295_179	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:34484565 () rs orientation: forward

Symbol	Name	Function Class
D1Ertd448e	DNA segment, Chr 1, ERATO Doi 448, expressed	309 bp upstream
Gm28306	predicted gene 28306	754 bp upstream
Imp4	IMP4, U3 small nucleolar ribonucleoprotein	within coordinates
Rr15762	regulatory region 15762	1965 bp distal
Tssr6216	transcription start site region 6216	1598 bp downstream
Tssr6217	transcription start site region 6217	580 bp downstream
Tssr6218	transcription start site region 6218	1547 bp upstream