rs4222260 SNP Detail

Summary

• ID
  rs4222260
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:34484637 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATCCAAA ACCCTGAACT
  TCCCCAAGGG CCCTGGGTTT GTATAGAGTG GTTGTCAAGA CCCTAGAGCT CGCAGAGAGA
  ATTGGTGATG GGATCTACCA TACCATTAGG AGGAGGCCTC TGAGGAAGCA TGCCAGACAG
  GATAAGGGAG ATGTCTGCAT GGTGTCATGA AAACCTAACG ATAGTGAGAG AACAGAAGCC
  R
  TCTGGATGAT GTGCAAGGCC CTTGAGGTCC AATAAGATGA GGAAGGTTAG GCCAGTGCTC
  TGGGACGGGT GGGCCCACAA CTGCAGCTCA TGAATCCAAT TCTCAACAAG GCCTCTGGGA
  TCCTCCCATG GCTTTGCGTG TGGTGTGTGT GTGTGTATAA ATTTCAAAAT GCAAGTAAAA
  TCATGTGATC TATGTTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6385222	AV031295_251	TWGNF	TWGNF-Mouse	f	SNP	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4222260					SNP	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6385222	AV031295_251	TWGNF	TWGNF-Mouse-2	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:34484637 () rs orientation: forward

Symbol	Name	Function Class
D1Ertd448e	DNA segment, Chr 1, ERATO Doi 448, expressed	237 bp upstream
Gm28306	predicted gene 28306	826 bp upstream
Imp4	IMP4, U3 small nucleolar ribonucleoprotein	within coordinates
Tssr6216	transcription start site region 6216	1670 bp downstream
Tssr6217	transcription start site region 6217	652 bp downstream
Tssr6218	transcription start site region 6218	1475 bp upstream