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rs4222262 SNP Detail
Summary
  • ID
    rs4222262
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr1:34484703 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGCTCGCAGA GAGAATTGGT
    GATGGGATCT ACCATACCAT TAGGAGGAGG CCTCTGAGGA AGCATGCCAG ACAGGATAAG
    GGAGATGTCT GCATGGTGTC ATGAAAACCT AACGATAGTG AGAGAACAGA AGCCATCTGG
    ATGATGTGCA AGGCCCTTGA GGTCCAATAA GATGAGGAAG GTTAGGCCAG TGCTCTGGGA
    Y
    GGGTGGGCCC ACAACTGCAG CTCATGAATC CAATTCTCAA CAAGGCCTCT GGGATCCTCC
    CATGGCTTTG CGTGTGGTGT GTGTGTGTGT ATAAATTTCA AAATGCAAGT AAAATCATGT
    GATCTATGTT TTTTGTTTGT TTTGAGACAG GGCTTGTGTA GCCCTGGCTA TCTAGCTGTC
    CTGGAACTCA CTCTGTAGAC                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129/Sv
A/J
BALB/cByJ
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
SPRET/EiJ
ss6385224 AV031295_317 TWGNF TWGNF-Mouse f SNP C C C C C C C T
SNP Consensus Information
SNP Consensus Type
129/Sv
A/J
BALB/cByJ
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
SPRET/EiJ
rs4222262 SNP C C C C C C C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss6385224 AV031295_317 TWGNF TWGNF-Mouse-2 f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:34484703 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
D1Ertd448e DNA segment, Chr 1, ERATO Doi 448, expressed 171 bp upstream
Gm28306 predicted gene 28306 892 bp upstream
Imp4 IMP4, U3 small nucleolar ribonucleoprotein within coordinates
Tssr6216 transcription start site region 6216 1736 bp downstream
Tssr6217 transcription start site region 6217 718 bp downstream
Tssr6218 transcription start site region 6218 1409 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory