rs4222263 SNP Detail

Summary

• ID
  rs4222263
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:34484709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGAGAAT TGGTGATGGG
  ATCTACCATA CCATTAGGAG GAGGCCTCTG AGGAAGCATG CCAGACAGGA TAAGGGAGAT
  GTCTGCATGG TGTCATGAAA ACCTAACGAT AGTGAGAGAA CAGAAGCCAT CTGGATGATG
  TGCAAGGCCC TTGAGGTCCA ATAAGATGAG GAAGGTTAGG CCAGTGCTCT GGGACGGGTG
  S
  GCCCACAACT GCAGCTCATG AATCCAATTC TCAACAAGGC CTCTGGGATC CTCCCATGGC
  TTTGCGTGTG GTGTGTGTGT GTGTATAAAT TTCAAAATGC AAGTAAAATC ATGTGATCTA
  TGTTTTTTGT TTGTTTTGAG ACAGGGCTTG TGTAGCCCTG GCTATCTAGC TGTCCTGGAA
  CTCACTCTGT AGACCTAGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss6385225	AV031295_323	TWGNF	TWGNF-Mouse	f	SNP	C			G	C				G					G					G																									G
ss16372908	01.035.133	TWGNF	TWGNF-Mouse-2	f	SNP		C	C	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	C	G	C	G	C	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	C	G
ss51237430	NES14285404	PERLEGEN	MM_PANEL2	f	SNP		C		G	G	C		G						G					G		G			C					G		G			G				G									C
ss148888915	ENSMUSSNP5757232	ENSEMBL	ENSEMBL_Sanger	f	SNP			C	G															G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs4222263					SNP	C	C	C	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	C	G	C	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6385225	AV031295_323	TWGNF	TWGNF-Mouse-2	f	SNP	C/G
ss51237430	NES14285404	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:34484709 () rs orientation: forward

Symbol	Name	Function Class
D1Ertd448e	DNA segment, Chr 1, ERATO Doi 448, expressed	165 bp upstream
Gm28306	predicted gene 28306	898 bp upstream
Imp4	IMP4, U3 small nucleolar ribonucleoprotein	within coordinates
Tssr6216	transcription start site region 6216	1742 bp downstream
Tssr6217	transcription start site region 6217	724 bp downstream
Tssr6218	transcription start site region 6218	1403 bp upstream