rs4222442 SNP Detail

Summary

• ID
  rs4222442
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:74319336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGCTCAC ACCAGCGAAT
  CAAAGTCAAA GAGACACGGC CTCCTACAAG GCCCCAGGGC TGGGCAGGGG AGGGAGGGCC
  TGGCAAGGCG GGTCTCCAGG GAGGAAAAGG ACAAGGAGTA AGCAGGTCAG CTGAAGGGGT
  CAGAAAGCAG TCCAGTGGTC TCCCCTCCTC TTCCCTCTGC ACCCCGCAAC TCTGCTGGGG
  R
  CAGGGGCGTC CCTTTATCCC CCTTAACACC AGACACCATG CCAGAGGCTA CAGCTGTTAA
  CGGTCAGGTC TCTGGACACA AAATACTTTT GCTTTGTGGT CTCCTGATGT GGTCACCACC
  AGGGAAGCAT CTCTGTAGAC AGAACACAGG GGTCAAAGGA CAGAGGAAGC TGAGGCCCAG
  TGCAAGCCCA CTCCCAGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6385405	AU040907_54	TWGNF	TWGNF-Mouse	f	SNP	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4222442					SNP	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6385405	AU040907_54	TWGNF	TWGNF-Mouse-2	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74319336 () rs orientation: forward

Symbol	Name	Function Class
Aamp	angio-associated migratory protein	within coordinates
Gm28364	predicted gene 28364	984 bp upstream
Gpbar1	G protein-coupled bile acid receptor 1	553 bp downstream
Rr17376	regulatory region 17376	536 bp distal
Tssr7371	transcription start site region 7371	979 bp upstream
Tssr7372	transcription start site region 7372	1005 bp upstream
Tssr7373	transcription start site region 7373	1037 bp upstream
Tssr7374	transcription start site region 7374	1048 bp upstream
Tssr12291	transcription start site region 12291	935 bp downstream