rs4222444 SNP Detail

Summary

• ID
  rs4222444
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:74319360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAAAGAGA CACGGCCTCC
  TACAAGGCCC CAGGGCTGGG CAGGGGAGGG AGGGCCTGGC AAGGCGGGTC TCCAGGGAGG
  AAAAGGACAA GGAGTAAGCA GGTCAGCTGA AGGGGTCAGA AAGCAGTCCA GTGGTCTCCC
  CTCCTCTTCC CTCTGCACCC CGCAACTCTG CTGGGGGCAG GGGCGTCCCT TTATCCCCCT
  Y
  AACACCAGAC ACCATGCCAG AGGCTACAGC TGTTAACGGT CAGGTCTCTG GACACAAAAT
  ACTTTTGCTT TGTGGTCTCC TGATGTGGTC ACCACCAGGG AAGCATCTCT GTAGACAGAA
  CACAGGGGTC AAAGGACAGA GGAAGCTGAG GCCCAGTGCA AGCCCACTCC CAGGGGTCCT
  GATATAGTGG CTCCAGCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6385407	AU040907_78	TWGNF	TWGNF-Mouse	f	SNP	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4222444					SNP	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6385407	AU040907_78	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74319360 () rs orientation: forward

Symbol	Name	Function Class
Aamp	angio-associated migratory protein	within coordinates
Gm28364	predicted gene 28364	960 bp upstream
Gpbar1	G protein-coupled bile acid receptor 1	577 bp downstream
Rr17376	regulatory region 17376	560 bp distal
Tssr7371	transcription start site region 7371	955 bp upstream
Tssr7372	transcription start site region 7372	981 bp upstream
Tssr7373	transcription start site region 7373	1013 bp upstream
Tssr7374	transcription start site region 7374	1024 bp upstream
Tssr12291	transcription start site region 12291	911 bp downstream