rs4222445 SNP Detail

Summary

• ID
  rs4222445
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:74319508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCTGCAC CCCGCAACTC
  TGCTGGGGGC AGGGGCGTCC CTTTATCCCC CTTAACACCA GACACCATGC CAGAGGCTAC
  AGCTGTTAAC GGTCAGGTCT CTGGACACAA AATACTTTTG CTTTGTGGTC TCCTGATGTG
  GTCACCACCA GGGAAGCATC TCTGTAGACA GAACACAGGG GTCAAAGGAC AGAGGAAGCT
  R
  AGGCCCAGTG CAAGCCCACT CCCAGGGGTC CTGATATAGT GGCTCCAGCA TCGCCTCTAC
  CATCAGCCCC TGCCTGAATC TGCACTTGCT TCTCAGACCC TTCTCCCAAA GCCAGGGAGC
  TGATTCAACT ATGCCCATGC AAACTGCAGA AGAACCAGTG AAGGAAGCCC CTAACATAGG
  AGGACCACAG ACCGAGCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6385408	AU040907_226	TWGNF	TWGNF-Mouse	f	SNP	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4222445					SNP	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6385408	AU040907_226	TWGNF	TWGNF-Mouse-2	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74319508 () rs orientation: forward

Symbol	Name	Function Class
Aamp	angio-associated migratory protein	within coordinates
Gm28364	predicted gene 28364	812 bp upstream
Gpbar1	G protein-coupled bile acid receptor 1	725 bp downstream
Rr17376	regulatory region 17376	708 bp distal
Tssr7371	transcription start site region 7371	807 bp upstream
Tssr7372	transcription start site region 7372	833 bp upstream
Tssr7373	transcription start site region 7373	865 bp upstream
Tssr7374	transcription start site region 7374	876 bp upstream
Tssr12291	transcription start site region 12291	763 bp downstream