rs4222448 SNP Detail

Summary

• ID
  rs4222448
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:74319575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCAGAGGC TACAGCTGTT
  AACGGTCAGG TCTCTGGACA CAAAATACTT TTGCTTTGTG GTCTCCTGAT GTGGTCACCA
  CCAGGGAAGC ATCTCTGTAG ACAGAACACA GGGGTCAAAG GACAGAGGAA GCTGAGGCCC
  AGTGCAAGCC CACTCCCAGG GGTCCTGATA TAGTGGCTCC AGCATCGCCT CTACCATCAG
  Y
  CCCTGCCTGA ATCTGCACTT GCTTCTCAGA CCCTTCTCCC AAAGCCAGGG AGCTGATTCA
  ACTATGCCCA TGCAAACTGC AGAAGAACCA GTGAAGGAAG CCCCTAACAT AGGAGGACCA
  CAGACCGAGC AGGACTGTTC ATTCTCAGGG TCAGGCCCCA CAATGGGTAG TTCACTGCCA
  ATCGCTGGGA TAGGGCTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6385411	AU040907_293	TWGNF	TWGNF-Mouse	f	SNP	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4222448					SNP	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6385411	AU040907_293	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74319575 () rs orientation: forward

Symbol	Name	Function Class
Aamp	angio-associated migratory protein	within coordinates
Gm28364	predicted gene 28364	745 bp upstream
Gpbar1	G protein-coupled bile acid receptor 1	792 bp downstream
Rr17376	regulatory region 17376	775 bp distal
Tssr7371	transcription start site region 7371	740 bp upstream
Tssr7372	transcription start site region 7372	766 bp upstream
Tssr7373	transcription start site region 7373	798 bp upstream
Tssr7374	transcription start site region 7374	809 bp upstream
Tssr12291	transcription start site region 12291	696 bp downstream