rs4223179 SNP Detail

Summary

• ID
  rs4223179
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:12518559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTCAAGT CAGCTGAGGA
  CGTCAACTGA GCACGTCAGC AGCGCGTGAA CTGGTGTCCT TTATGGCAGA GGCGCAAAAG
  CACAAAGCGG CTGCTGCGTC AGGGTCTTCT GTGAGGTCCG CATTTCTGTG CTCATTTGGT
  GGCTGGCAGC TTGGCTGTAG GCACTTCTCC GACTGAGGCG ACCATGGCAG CAGTAGCAGC
  R
  CTAATGCGGA AAACGCTAGA TTATCTTAAG ACCAAGGAGT TTCGGGATTA TATAACCAGC
  ACCCACTTCT GGGGTCCTGT GGCCAACTGG GGCCTTCCGC TGGCCGCCTT TAAGGATATG
  AAGGCGCCTC CCGACATCAT CAGCGGCCGC ATGACGACCG CCCTCATCTT CTACTCCATG
  GCTTTCATGC GCTTTGCCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6386145	AI428901_38	TWGNF	TWGNF-Mouse	f	SNP	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4223179					SNP	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6386145	AI428901_38	TWGNF	TWGNF-Mouse-2	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:12518559 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22627	CpG island 22627	within coordinates
Gm4984	predicted pseudogene 4984	within coordinates
Rr2753	regulatory region 2753	559 bp distal
Tssr160565	transcription start site region 160565	79 bp downstream
Tssr160566	transcription start site region 160566	58 bp downstream
Tssr160567	transcription start site region 160567	34 bp downstream