rs4223180 SNP Detail

Summary

• ID
  rs4223180
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:12518831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTCCTGTG GCCAACTGGG
  GCCTTCCGCT GGCCGCCTTT AAGGATATGA AGGCGCCTCC CGACATCATC AGCGGCCGCA
  TGACGACCGC CCTCATCTTC TACTCCATGG CTTTCATGCG CTTTGCCTAC CGTGTCCAGC
  CTCGAAACTA CCTGCTGCTG GCGTGCCATT TCTCCAACGT GTTGGCGCAG AGCATCCAGG
  S
  GGGCCGTTTC CTGAAGCACC AATATGGTGG TGGAGCCAAG GCCAAAGCCA CCAACCCTCC
  GGCCAAATAG GCCTCATGAC TGGGGGAAGG GATGAGAGGG GTAGCCTGAA CCAGATTTTG
  CAGCTTGCAA GCACTGGACT CTATTCCTCC TAAAGAAAAG CCAAGGAAAA CTTTGGTTTT
  CAAACCTGAT TTAAACCAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6386146	AI428901_310	TWGNF	TWGNF-Mouse	f	SNP	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4223180					SNP	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6386146	AI428901_310	TWGNF	TWGNF-Mouse-2	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:12518831 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22627	CpG island 22627	11 bp distal
Gm4984	predicted pseudogene 4984	within coordinates
Rr2753	regulatory region 2753	831 bp distal
Tssr160565	transcription start site region 160565	351 bp downstream
Tssr160566	transcription start site region 160566	330 bp downstream
Tssr160567	transcription start site region 160567	306 bp downstream