rs4223181 SNP Detail

Summary

• ID
  rs4223181
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:12518881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCGCCTCC CGACATCATC
  AGCGGCCGCA TGACGACCGC CCTCATCTTC TACTCCATGG CTTTCATGCG CTTTGCCTAC
  CGTGTCCAGC CTCGAAACTA CCTGCTGCTG GCGTGCCATT TCTCCAACGT GTTGGCGCAG
  AGCATCCAGG CGGGCCGTTT CCTGAAGCAC CAATATGGTG GTGGAGCCAA GGCCAAAGCC
  R
  CCAACCCTCC GGCCAAATAG GCCTCATGAC TGGGGGAAGG GATGAGAGGG GTAGCCTGAA
  CCAGATTTTG CAGCTTGCAA GCACTGGACT CTATTCCTCC TAAAGAAAAG CCAAGGAAAA
  CTTTGGTTTT CAAACCTGAT TTAAACCAGA TTGGTTAATT AAAAAAAAAA GCCATCAAAT
  TGATATTGAG TGTTGCCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6386147	AI428901_360	TWGNF	TWGNF-Mouse	f	SNP	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4223181					SNP	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6386147	AI428901_360	TWGNF	TWGNF-Mouse-2	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:12518881 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22627	CpG island 22627	61 bp distal
Gm4984	predicted pseudogene 4984	within coordinates
Rr2753	regulatory region 2753	881 bp distal
Tssr160565	transcription start site region 160565	401 bp downstream
Tssr160566	transcription start site region 160566	380 bp downstream
Tssr160567	transcription start site region 160567	356 bp downstream