rs4223205 SNP Detail

Summary

• ID
  rs4223205
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:68944406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCGCTCAA AGCTTAATTA
  GCATAAGTGT GGACCACACT CCAGCTTAAT TCCCCTGTGC ACACAGTTCT CATCACTCCT
  GTGCCCAAGT CCCAGTCATT TCCCTTCATG GCCTGTAGCT GTCAGAGAAA GGAATGGTGG
  TTAATTTGGA GGTTTGTTTC TCTTTTCCAG CTTTCCCTGG GGACTAGAAT AAGTGACAGA
  R
  CCTCATTTGT TTTCTAAAGA TAGTTCGGTG CGTGAGCATC TGTCAGAAGT GGAATGGTGT
  GCCATTAGCC AATTAGAATC ACTCTGTACT GTCACTGTGT TTTTGCTGAT TTTTTATATG
  GGAATATAAT TACTCGTTCT TGATCTTTGG AAGTAATTGT TATTATGAGG ATCATTTTAC
  TTTGGAAACA CTTTCATAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss6386171	AW544719_132	TWGNF	TWGNF-Mouse	f	SNP	G		A		A		A	A	A	A							A
ss38132454	NES09288995	PERLEGEN	MM_PANEL2	f	SNP		G	A	A	A	A	A		A	A	A	G	A	A	G	A		A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs4223205					SNP	G	G	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6386171	AW544719_132	TWGNF	TWGNF-Mouse-2	f	SNP	A/G
ss38132454	NES09288995	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:68944406 () rs orientation: forward

Symbol	Name	Function Class
Cers6	ceramide synthase 6	within coordinates
Rr44228	regulatory region 44228	1006 bp distal
Rr44229	regulatory region 44229	6 bp distal
Rr50098	regulatory region 50098	within coordinates
Rr50099	regulatory region 50099	1995 bp proximal
Tssr18100	transcription start site region 18100	1479 bp downstream
Tssr18101	transcription start site region 18101	491 bp downstream
Tssr18102	transcription start site region 18102	459 bp downstream
Tssr18103	transcription start site region 18103	252 bp downstream
Tssr18104	transcription start site region 18104	659 bp upstream