rs4223207 SNP Detail

Summary

• ID
  rs4223207
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:68944488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCAAGTCC CAGTCATTTC
  CCTTCATGGC CTGTAGCTGT CAGAGAAAGG AATGGTGGTT AATTTGGAGG TTTGTTTCTC
  TTTTCCAGCT TTCCCTGGGG ACTAGAATAA GTGACAGAAC CTCATTTGTT TTCTAAAGAT
  AGTTCGGTGC GTGAGCATCT GTCAGAAGTG GAATGGTGTG CCATTAGCCA ATTAGAATCA
  Y
  TCTGTACTGT CACTGTGTTT TTGCTGATTT TTTATATGGG AATATAATTA CTCGTTCTTG
  ATCTTTGGAA GTAATTGTTA TTATGAGGAT CATTTTACTT TGGAAACACT TTCATAATAA
  AGATAAACAT TAAGAGTACA GCATGAGTGT CCTTTATTGT AAGCATCGAC CAGCTGAATT
  GGGAACACAT CCAACATCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J
ss6386173	AW544719_214	TWGNF	TWGNF-Mouse	f	SNP	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J
rs4223207					SNP	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6386173	AW544719_214	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:68944488 () rs orientation: forward

Symbol	Name	Function Class
Cers6	ceramide synthase 6	within coordinates
Rr44228	regulatory region 44228	1088 bp distal
Rr44229	regulatory region 44229	88 bp distal
Rr50098	regulatory region 50098	within coordinates
Rr50099	regulatory region 50099	1913 bp proximal
Tssr18100	transcription start site region 18100	1561 bp downstream
Tssr18101	transcription start site region 18101	573 bp downstream
Tssr18102	transcription start site region 18102	541 bp downstream
Tssr18103	transcription start site region 18103	334 bp downstream
Tssr18104	transcription start site region 18104	577 bp upstream