rs4223209 SNP Detail

Summary

• ID
  rs4223209
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:68944654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGAATGG TGTGCCATTA
  GCCAATTAGA ATCACTCTGT ACTGTCACTG TGTTTTTGCT GATTTTTTAT ATGGGAATAT
  AATTACTCGT TCTTGATCTT TGGAAGTAAT TGTTATTATG AGGATCATTT TACTTTGGAA
  ACACTTTCAT AATAAAGATA AACATTAAGA GTACAGCATG AGTGTCCTTT ATTGTAAGCA
  Y
  CGACCAGCTG AATTGGGAAC ACATCCAACA TCTCTGGGTG GGACTGTGTC AGAGCTCAGC
  CATCCGGTTA TTTCTTAATG ATTCTCCAAG GCGTTGTGAC CATTGAGAAA TACTGTTATA
  TCGTCTTGTG ATATGCTAAA GTGTCTCCTT GAAATTTAGG GTGCAAAGCC TTCAGTGTTA
  AATCTCACGG TAACACCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6386175	AW544719_380	TWGNF	TWGNF-Mouse	f	SNP	T	T	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4223209					SNP	T	T	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6386175	AW544719_380	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:68944654 () rs orientation: forward

Symbol	Name	Function Class
Cers6	ceramide synthase 6	28 bp downstream
Rr44228	regulatory region 44228	1254 bp distal
Rr44229	regulatory region 44229	254 bp distal
Rr50098	regulatory region 50098	within coordinates
Rr50099	regulatory region 50099	1747 bp proximal
Tssr18100	transcription start site region 18100	1727 bp downstream
Tssr18101	transcription start site region 18101	739 bp downstream
Tssr18102	transcription start site region 18102	707 bp downstream
Tssr18103	transcription start site region 18103	500 bp downstream
Tssr18104	transcription start site region 18104	411 bp upstream