rs4223225 SNP Detail

Summary

• ID
  rs4223225
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:74550160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGGGATG AAGGCCTGCA
  CCACCACTGC CCAGCTTCCT TACAGATGCT GCAGGAAGGC TACCCTCTTT TCTCCCTTCC
  TTGTCGACTG GAACAACTAC CAACATTCAA AGTCCTTGGG AGCCAGAATG TTGGCTGGGG
  CTCAGAGTTT GGGCTCTTGT CTAGCACTCC CAAGTTCCTA CTGGGAGTTG CAATGGCAGC
  R
  GATGGGGTGG AGAAGCCCTG GGGAACCTGG AGCACACTAG TACTCTCTGC CAGATCCCTA
  TTCTTTCTCT TTCATTCACA AAACCTGGGC CACTGGAGGT GTGATGCAAT GGCAAGGGGT
  GGAGGAAGAT GCATACTTGT TTCTTAATCA CTTTGTCTTT GAGCTCTAAG ATCAGAAAAC
  AAAGATGTCT GCCTCAGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6386191	AI225831_72	TWGNF	TWGNF-Mouse	f	SNP	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4223225					SNP	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6386191	AI225831_72	TWGNF	TWGNF-Mouse-2	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74550160 () rs orientation: forward

Symbol	Name	Function Class
Hoxd3	homeobox D3	Intron
Igs15	intergenic site 15	within coordinates
Rr559377	regulatory region 559377	189 bp proximal
Rr559378	regulatory region 559378	1063 bp proximal