rs4223228 SNP Detail

Summary

• ID
  rs4223228
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:74550304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTTGGGC TCTTGTCTAG
  CACTCCCAAG TTCCTACTGG GAGTTGCAAT GGCAGCGGAT GGGGTGGAGA AGCCCTGGGG
  AACCTGGAGC ACACTAGTAC TCTCTGCCAG ATCCCTATTC TTTCTCTTTC ATTCACAAAA
  CCTGGGCCAC TGGAGGTGTG ATGCAATGGC AAGGGGTGGA GGAAGATGCA TACTTGTTTC
  Y
  TAATCACTTT GTCTTTGAGC TCTAAGATCA GAAAACAAAG ATGTCTGCCT CAGTGTATTT
  CTCCCCTCCC CCCCCCTCCA TTTTCTCACA CCTGATCTGA TTTCCTGTCA CTCCCTTAAA
  CACCCAGAGT AGGCTCCGTC TTCCCGTGGA ACCTAAGTTT GCAAGCATGT CTCAGGCATC
  ATTCTTCATC ATTTCTCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss6386194	AI225831_216	TWGNF	TWGNF-Mouse	f	SNP	T		T		T		T	T	C	T							T
ss38112868	NES09259315	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	T	T			T	T	T	C	T	T	C		T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs4223228					SNP	T	T	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6386194	AI225831_216	TWGNF	TWGNF-Mouse-2	f	SNP	C/T
ss38112868	NES09259315	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74550304 () rs orientation: forward

Symbol	Name	Function Class
Hoxd3	homeobox D3	Intron
Igs15	intergenic site 15	within coordinates
Rr559377	regulatory region 559377	45 bp proximal
Rr559378	regulatory region 559378	919 bp proximal
Rr559379	regulatory region 559379	1858 bp proximal