rs4223229 SNP Detail

Summary

• ID
  rs4223229
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:74550406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCCAGAT CCCTATTCTT
  TCTCTTTCAT TCACAAAACC TGGGCCACTG GAGGTGTGAT GCAATGGCAA GGGGTGGAGG
  AAGATGCATA CTTGTTTCTT AATCACTTTG TCTTTGAGCT CTAAGATCAG AAAACAAAGA
  TGTCTGCCTC AGTGTATTTC TCCCCTCCCC CCCCCTCCAT TTTCTCACAC CTGATCTGAT
  W
  TCCTGTCACT CCCTTAAACA CCCAGAGTAG GCTCCGTCTT CCCGTGGAAC CTAAGTTTGC
  AAGCATGTCT CAGGCATCAT TCTTCATCAT TTCTCATCCA TAAAAAGTAA CTACTGATTG
  CCAGCCAGAC ACCGGGCACT GTTATCCATC CACCATGTCT CAAGGCTTGT CTTTAACCGG
  CTCTTGCCTC CTTACAAAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6386195	AI225831_318	TWGNF	TWGNF-Mouse	f	SNP	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4223229					SNP	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6386195	AI225831_318	TWGNF	TWGNF-Mouse-2	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74550406 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hoxd3	homeobox D3			Intron
Hoxd4	homeobox D4			Intron
				Noncoding-Transcript-Variant
Igs15	intergenic site 15			within coordinates
Rr559377	regulatory region 559377			within coordinates
Rr559378	regulatory region 559378			817 bp proximal
Rr559379	regulatory region 559379			1756 bp proximal
Rr559380	regulatory region 559380			1927 bp proximal
Tssr18438	transcription start site region 18438			1990 bp upstream