rs4223259 SNP Detail

Summary

• ID
  rs4223259
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  111
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90945403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                               ATAT
  GTGAGAGCAG ATATGGGTAT ATGTATGGAT ACACGTGACA TATCTATGAG GATTTGTATA
  TATGGAGGGG TGTGCACTTG AGTGGGAGTG GGCACGTGTG TGCTTGCACC TACCATGGCT
  GGGAGGAGCT GGTGGGAGGG TCCCCATAAA ATCCTTGCAT CCTGTCCACA CACCACTTGG
  K
  TGCCCATCTC TCACAGGCAG CAAGAAAAAG ATTCGCCTGT ACCAGTTCCT GCTGGACCTG
  CTGCGCAGCG GCGACATGAA GGACAGCATC TGGTGGGTGG ACAAGGACAA AGGTACCTTC
  CAGTTCTCGT CCAAGCACAA GGAGGCGCTG GCGCACCGCT GGGGCATCCA GAAGGGCAAC
  CGCAAGAAGA TGACCTACCA GAAGATGGCG                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J
ss6386225	X17463_185	TWGNF	TWGNF-Mouse	f	SNP	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J
rs4223259					SNP	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6386225	X17463_185	TWGNF	TWGNF-Mouse-2	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90945403 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11896	CpG island 11896	within coordinates
Rr373534	regulatory region 373534	1391 bp downstream
Rr560650	regulatory region 560650	887 bp distal
Rr560651	regulatory region 560651	131 bp proximal
Rr560652	regulatory region 560652	194 bp proximal
Spi1	Spi-1 proto-oncogene	Intron
Tssr18850	transcription start site region 18850	1780 bp downstream
Tssr18851	transcription start site region 18851	775 bp downstream
Tssr18852	transcription start site region 18852	715 bp downstream
Tssr18853	transcription start site region 18853	102 bp upstream
Tssr18854	transcription start site region 18854	137 bp upstream
Tssr18855	transcription start site region 18855	302 bp upstream
Tssr18856	transcription start site region 18856	349 bp upstream
Tssr18857	transcription start site region 18857	464 bp upstream
Tssr18858	transcription start site region 18858	528 bp upstream
Tssr18859	transcription start site region 18859	635 bp upstream
Tssr25158	transcription start site region 25158	687 bp downstream