rs4223410 SNP Detail

Summary

• ID
  rs4223410
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118755047 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AACCA AATCCCCAAA ATAGAAGCAC
  M
  AAGCCAAACT CAAAACAAAA CACAC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss6386376	AW541238_50	TWGNF	TWGNF-Mouse	f	SNP	C				C				A					C				C																					C
ss16374098	02.119.195	TWGNF	TWGNF-Mouse-2	f	SNP		C		C	C	C	C	C	A	A	A	A	A	C	C	C	C	C	C	C	C	A	A	A	C	C	C	A	A	C	C	C	C	C	C	C	C	C	C	C	C
ss45361303	mCV22545736	ABI	CRAMUS_MOUSE	r	SNP		G	G	G					T
ss147317278	ENSMUSSNP6187188	ENSEMBL	ENSEMBL_Sanger	r	SNP				G
ss320472648	CHEV_2_118750302	CHEVERUD	SCREENING_POP	r	SNP																								T														G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs4223410					SNP	C	C	C	C	C	C	C	C	A	A	A	A	A	C	C	C	C	C	C	C	C	A	A	A	C	C	C	A	A	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6386376	AW541238_50	TWGNF	TWGNF-Mouse-2	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118755047 () rs orientation: reverse

Symbol	Name	Function Class
Bahd1	bromo adjacent homology domain containing 1	38 bp downstream
Chst14	carbohydrate sulfotransferase 14	1931 bp upstream
Cpgi12099	CpG island 12099	1720 bp proximal
Rr563380	regulatory region 563380	1440 bp proximal
Tssr19592	transcription start site region 19592	1930 bp upstream
Tssr19593	transcription start site region 19593	1989 bp upstream