rs4223646 SNP Detail

Summary

• ID
  rs4223646
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163308139 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TAAACAAGCG AATTAAAGGG
  CACTGGAGAT AATGGAGTCT ACATTCCGGA GTTTGCTGTG TTCCTTTCTG TGTGTTGATT
  TAACTTTTTA ACTTCAACTT TTAAATTAAA TTGTGTGTGT GTGTGTGTCT CTGTGTGTGT
  GTGTGTGTGT GTTTTGCGAG CACACCATGG CATACATGTG AAGATCAGAG AACAATTTTC
  W
  TGAGTCAATT CTCTCCTACC ATATAGGACT TTCAGGTCAA ACTCAGGTAG CCAGGCTTGG
  CAGCAAGCGC CTTTGCCGGG GAGCTATCTT GTTCACCTTA GTTTTAAATC TTTATTATTA
  TTGTGTGTAA TGTGCATGTG TTTGTACACA TATGCCACAA GGACAGCTTC GTGGAGTTGG
  CTCTCCCCTG TCATTGGATC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	SPRET/EiJ
ss6386615	AI414861_330	TWGNF	TWGNF-Mouse	f	SNP	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	SPRET/EiJ
rs4223646					SNP	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6386615	AI414861_330	TWGNF	TWGNF-Mouse-2	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163308139 () rs orientation: reverse

Symbol	Name	Function Class
Rr374196	regulatory region 374196	986 bp downstream
Rr569383	regulatory region 569383	1906 bp distal
Rr569384	regulatory region 569384	1273 bp distal
Rr569385	regulatory region 569385	487 bp proximal