rs4223657 SNP Detail

Summary

• ID
  rs4223657
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164790430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGCCCCT TACCAGCGCC
  AGCCGACTTT TGTGGTCTTC CCCAAAGACC TGAAAACCTC CAACCTCACG GACACCCAGC
  TGGCAGAGGT AGACAGATGG CTCGGTGGAT AGCTGAGAAG GGCTGGTCAG GAAGATGTCC
  CCCTCTCCCA AGGAATGGGG CCTCAGATAT GCTTTCTGGA TTTGGGGGTG ATGGGCATGT
  S
  TGCCAGGGTT AGGCAGTAGG GGGTAGGTGG TCTGGAGGCT CTGGGCAGAT TCGGGTCTGT
  TGGAGGGACA GATTGGGTTC GGCTTCGAAG GGTTGTGACA TGGCGCAGGT TGGCAGTGAA
  CAGTTAAACT CTAGTGGGGC TGAGGGGTAG GCATGGTTTA TATCATCTGA GGTCGAGGTG
  TGATGCTGTC CTCAGGATAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J
ss6386626	D12712_83	TWGNF	TWGNF-Mouse	f	SNP	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J
rs4223657					SNP	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6386626	D12712_83	TWGNF	TWGNF-Mouse-2	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164790430 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12679	CpG island 12679	578 bp proximal
D2Dcr116	DNA Segment, Chr 2, Derry C. Roopenian 116	339 bp distal
D2Mit1000	DNA segment, Chr 2, Massachusetts Institute of Technology 1000	312 bp distal
Mmp9	matrix metallopeptidase 9	within coordinates
Tssr21688	transcription start site region 21688	1435 bp downstream
Tssr21689	transcription start site region 21689	762 bp downstream
Tssr21690	transcription start site region 21690	265 bp downstream