rs4223659 SNP Detail

Summary

• ID
  rs4223659
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164790670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGGCAGA TTCGGGTCTG
  TTGGAGGGAC AGATTGGGTT CGGCTTCGAA GGGTTGTGAC ATGGCGCAGG TTGGCAGTGA
  ACAGTTAAAC TCTAGTGGGG CTGAGGGGTA GGCATGGTTT ATATCATCTG AGGTCGAGGT
  GTGATGCTGT CCTCAGGATA GGGGAATTCT AGCTGTGTAG GAAGAACTGG TGTCCTGGCC
  K
  TAGAGTCCCT AAGCATGTGG CCCAGAGGTC CAGAGCCAAG GTGCCAGAAC TCTGTGATGT
  CTCTGCCCCT TCCTCCATCC ACAGGCATAC TTGTACCGCT ATGGTTACAC CCGGGCCGCC
  CAGATGATGG GAGAGAAGCA GTCTCTACGG CCGGCTTTGC TGATGCTTCA GAAGCAGCTC
  TCCCTGCCCC AGACTGGTGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss6386628	D12712_323	TWGNF	TWGNF-Mouse	f	SNP	G		G		G		G	G	T	G
ss37515805	NES08880462	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	G	G	G		T	G	G	T	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs4223659					SNP	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6386628	D12712_323	TWGNF	TWGNF-Mouse-2	f	SNP	G/T
ss37515805	NES08880462	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164790670 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12679	CpG island 12679	338 bp proximal
D2Dcr116	DNA Segment, Chr 2, Derry C. Roopenian 116	579 bp distal
D2Mit1000	DNA segment, Chr 2, Massachusetts Institute of Technology 1000	552 bp distal
Mmp9	matrix metallopeptidase 9	within coordinates
Tssr21688	transcription start site region 21688	1675 bp downstream
Tssr21689	transcription start site region 21689	1002 bp downstream
Tssr21690	transcription start site region 21690	505 bp downstream