rs4223752 SNP Detail

Summary

• ID
  rs4223752
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17849355 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GCAGA AACCTTTGTC ACTCATCCCC
  Y
  GTTGCCAGAG ATCTAGCAGA AAAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss6386721	AW125202_384	TWGNF	TWGNF-Mouse	f	SNP	C			T		C			T	T						T					T
ss16374449	03.017.673	TWGNF	TWGNF-Mouse-2	f	SNP		C	C	T	T	C	C	C	T	T	T	T	T	T	C	T	T	T	T	T	T	C	C	T	T	T	T	C	C	T	T	C	T	T	T	T	T	T	T	C	T	C	C	C	C	C	C	T	T
ss45435941	mCV22663603	ABI	CRAMUS_MOUSE	r	SNP		G	G	A						A
ss134653806	ENSMUSSNP2085518	ENSEMBL	ENSEMBL_Sanger	r	SNP			G	A
ss320673725	CHEV_3_17695191	CHEVERUD	SCREENING_POP	r	SNP																											A																	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs4223752					SNP	C	C	C	T	T	C	C	C	T	T	T	T	T	T	C	T	T	T	T	T	T	C	C	T	T	T	T	C	C	T	T	C	T	T	T	T	T	T	T	C	T	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6386721	AW125202_384	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17849355 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi12996	CpG island 12996	173 bp distal
Gm66000	predicted gene, 66000	973 bp upstream
Mir124-2hg	Mir124-2 host gene (non-protein coding)	within coordinates
Mir124a-2	microRNA 124a-2	471 bp upstream
Mir124b	microRNA 124b	494 bp downstream
Rr573851	regulatory region 573851	1261 bp distal
Tssr28485	transcription start site region 28485	1265 bp downstream
Tssr28486	transcription start site region 28486	1199 bp downstream
Tssr28487	transcription start site region 28487	1149 bp downstream
Tssr28488	transcription start site region 28488	852 bp downstream
Tssr28489	transcription start site region 28489	552 bp upstream