rs4223753 SNP Detail

Summary

• ID
  rs4223753
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17849344 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TGATGACATG GATCGAAGTT
  AATTACCCCT CTGGTACAGA TCTAATTTCG TAATCGTGTT ATTTTACTGA AGGCAATTAA
  CTGAGTTGGT TCGCCCTGAA TGCCGTCCTA AGACATTTGT AAGGAAAGGC AAGTCTTTAA
  GGACCACACC ATGAGTGTTC TGCTGCAGAA ACCTTTGTCA CTCATCCCCT GTTGCCAGAG
  W
  TCTAGCAGAA AAAGCGAATA TAATCATGCA TGTTTGTATG TCCGACAAAC ACACGTATAC
  GCCTTTGATA GCCCGATTTT GGTTGGGAAA TTTTGGGAAA AGATCAGAAT CCCAGGCCGG
  CTGGGTCCTC CTTCTTTGTA TTGCGGAAAA ATTAACTCAA CAGCACCTGC CGAGTCCCGG
  GAGAGCTGGG GCCCATCTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss6386722	AW125202_395	TWGNF	TWGNF-Mouse	f	SNP	A		A		A		A	A	T	A
ss46817772	NES10864833	PERLEGEN	MM_PANEL2	r	SNP		T	T	T	T	T	T		A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs4223753					SNP	A	A	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6386722	AW125202_395	TWGNF	TWGNF-Mouse-2	f	SNP	A/T
ss46817772	NES10864833	PERLEGEN	MM_PANEL	r	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17849344 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi12996	CpG island 12996	162 bp distal
Gm66000	predicted gene, 66000	962 bp upstream
Mir124-2hg	Mir124-2 host gene (non-protein coding)	within coordinates
Mir124a-2	microRNA 124a-2	482 bp upstream
Mir124b	microRNA 124b	505 bp downstream
Rr573851	regulatory region 573851	1250 bp distal
Tssr28485	transcription start site region 28485	1254 bp downstream
Tssr28486	transcription start site region 28486	1188 bp downstream
Tssr28487	transcription start site region 28487	1138 bp downstream
Tssr28488	transcription start site region 28488	841 bp downstream
Tssr28489	transcription start site region 28489	563 bp upstream