rs4223951 SNP Detail

Summary

• ID
  rs4223951
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50319419 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CATAG TTTACATATT AAGCATCATG
  Y
  TTCTTTTCTA TAATAAATAC TGCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss6386922	AI451155_256	TWGNF	TWGNF-Mouse	f	SNP	T			C		C		T	T	T	C								T
ss49593957	NES12919625	PERLEGEN	MM_PANEL2	r	SNP		A			G	A	A	A		A	G	G		A	G	A	A			A
ss135158356	ENSMUSSNP433968	ENSEMBL	ENSEMBL_Sanger	r	SNP			A	G							G
ss320757142	CHEV_3_50168892	CHEVERUD	SCREENING_POP	r	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs4223951					SNP	T	T	T	C	C	?	T	T	T	T	C	C	C	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6386922	AI451155_256	TWGNF	TWGNF-Mouse-2	f	SNP	C/T
ss49593957	NES12919625	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50319419 () rs orientation: reverse

Symbol	Name	Function Class
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	within coordinates
Tssr33101	transcription start site region 33101	1442 bp downstream
Tssr33102	transcription start site region 33102	1463 bp downstream
Tssr33103	transcription start site region 33103	1547 bp downstream
Tssr33104	transcription start site region 33104	1559 bp downstream
Tssr33105	transcription start site region 33105	1620 bp downstream
Tssr33106	transcription start site region 33106	1664 bp downstream
Tssr33107	transcription start site region 33107	1689 bp downstream
Tssr33108	transcription start site region 33108	1753 bp downstream
Tssr33109	transcription start site region 33109	1818 bp downstream
Tssr33110	transcription start site region 33110	1872 bp downstream
Tssr33111	transcription start site region 33111	1905 bp downstream
Tssr33112	transcription start site region 33112	1944 bp downstream
Tssr33113	transcription start site region 33113	1990 bp downstream