rs4223953 SNP Detail

Summary

• ID
  rs4223953
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50319379 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AAATA CTGCTTTAAG CTGAAGCTGG
  Y
  GCTTTTTATG ATTTTTTTTT TGTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6386924	AI451155_296	TWGNF	TWGNF-Mouse	f	SNP	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4223953					SNP	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6386924	AI451155_296	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50319379 () rs orientation: reverse

Symbol	Name	Function Class
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	6 bp downstream
Tssr33101	transcription start site region 33101	1482 bp downstream
Tssr33102	transcription start site region 33102	1503 bp downstream
Tssr33103	transcription start site region 33103	1587 bp downstream
Tssr33104	transcription start site region 33104	1599 bp downstream
Tssr33105	transcription start site region 33105	1660 bp downstream
Tssr33106	transcription start site region 33106	1704 bp downstream
Tssr33107	transcription start site region 33107	1729 bp downstream
Tssr33108	transcription start site region 33108	1793 bp downstream
Tssr33109	transcription start site region 33109	1858 bp downstream
Tssr33110	transcription start site region 33110	1912 bp downstream
Tssr33111	transcription start site region 33111	1945 bp downstream
Tssr33112	transcription start site region 33112	1984 bp downstream