rs4223954 SNP Detail

Summary

• ID
  rs4223954
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50319328 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CATTG ATTGTCTGCA TGTGTTGAAC
  Y
  ATTTCTTGGC ACTAATTTGC TGTAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss6386925	AI451155_346	TWGNF	TWGNF-Mouse	f	SNP	T			C		C		T	T	T	C									T
ss49593959	NES12919623	PERLEGEN	MM_PANEL2	r	SNP		A		G	G	A	A	A		A	G	G	G		G	G	A	G			A
ss135158353	ENSMUSSNP2099580	ENSEMBL	ENSEMBL_Sanger	r	SNP			A	G							G
ss320757141	CHEV_3_50168801	CHEVERUD	SCREENING_POP	r	SNP														G					A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs4223954					SNP	T	T	T	C	C	?	T	T	T	T	C	C	C	C	C	C	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6386925	AI451155_346	TWGNF	TWGNF-Mouse-2	f	SNP	C/T
ss49593959	NES12919623	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50319328 () rs orientation: reverse

Symbol	Name	Function Class
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	57 bp downstream
Tssr33101	transcription start site region 33101	1533 bp downstream
Tssr33102	transcription start site region 33102	1554 bp downstream
Tssr33103	transcription start site region 33103	1638 bp downstream
Tssr33104	transcription start site region 33104	1650 bp downstream
Tssr33105	transcription start site region 33105	1711 bp downstream
Tssr33106	transcription start site region 33106	1755 bp downstream
Tssr33107	transcription start site region 33107	1780 bp downstream
Tssr33108	transcription start site region 33108	1844 bp downstream
Tssr33109	transcription start site region 33109	1909 bp downstream
Tssr33110	transcription start site region 33110	1963 bp downstream
Tssr33111	transcription start site region 33111	1996 bp downstream