rs4224072 SNP Detail

Summary

• ID
  rs4224072
• Variation Type
  SNP
• Alleles
  A/C/G/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89251138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGCCCACA AACTCAGGAA
  AAGCCCATTT TTCCCCACTT ACCTAGGGGC ACAAGGCATG TAGCTACCAC CAGGGCTGCG
  CCCACAGCTC CCAAAGGCAT TACCCCGAGT GTTGGCTGTT TGGAGGCAAA GTGGCGCAGC
  AGGCTGGGCC CCGGGTCCCC AAAGTGACTG GCACTGCCGG GCATAGGAGG CACAGCGCCC
  N
  TGCATACACA CAGCCTCTCC ACTAGCACAA GGCTCACCGT CCCCAAGTCT GATGTCAGAC
  GGGCACTGAG AGCTATCTCC TGGGCAGAAC TCAGGCAGAT CACAATCGTC TGTGGGAGGG
  CGGCACAGCC AACCAGCTGG GTGCAACTGT GGAGGGTAGT GAGCATCAAA GTAGGTACTG
  GGCAGGGTCA GCCAGGAGCT                                            
  
  N = A/C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss6387046	AF006196_278	TWGNF	TWGNF-Mouse	f	SNP	A		A		A		A	A					A				A																						G
ss16374762	C03.086.380	TWGNF	TWGNF-Mouse-2	f	SNP		T	T		T	T		T	T	T	T	T	T	T	T	C	T	T	T	C	C	T	T	C	C	C	C	T	T	C	T	C		C	T	C	T	T	C	C	T		C
ss46749761	NES10735486	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	A	A						A				A	A								G		A	A				G									A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs4224072					SNP	A	?	A	A	A	?	A	?	T	T	T	T	A	T	T	C	A	?	T	C	C	T	T	C	C	?	C	?	?	C	T	C	G	C	T	C	T	T	?	C	T	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6387046	AF006196_278	TWGNF	TWGNF-Mouse-2	f	SNP	A/G
ss46749761	NES10735486	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89251138 () rs orientation: forward

Symbol	Name	Function Class
4731419I09Rik	RIKEN cDNA 4731419I09 gene	within coordinates
Adam15	ADAM metallopeptidase domain 15	within coordinates
Tssr34119	transcription start site region 34119	1466 bp upstream