rs4224085 SNP Detail

Summary

• ID
  rs4224085
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90600427 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGTGC CCACGGCAGA GGGCTCTCTG
  R
  GGAAAAAATG AAAAGTGTTT AGCAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J
ss6387059	AW546964_27	TWGNF	TWGNF-Mouse	f	SNP	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J
rs4224085					SNP	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6387059	AW546964_27	TWGNF	TWGNF-Mouse-2	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90600427 () rs orientation: reverse

Symbol	Name	Function Class
S100a9	S100 calcium binding protein A9 (calgranulin B)	within coordinates
Tssr949	transcription start site region 949	330 bp downstream
Tssr950	transcription start site region 950	199 bp upstream
Tssr951	transcription start site region 951	1051 bp downstream
Tssr30268	transcription start site region 30268	482 bp downstream
Tssr30269	transcription start site region 30269	371 bp downstream
Tssr30270	transcription start site region 30270	223 bp downstream
Tssr34252	transcription start site region 34252	387 bp upstream
Tssr34253	transcription start site region 34253	255 bp upstream
Tssr34254	transcription start site region 34254	1834 bp downstream
Tssr34255	transcription start site region 34255	1929 bp downstream