rs4224331 SNP Detail

Summary

• ID
  rs4224331
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153562989 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TAGTA TATTAACCTC AGAATGGTCA
  Y
  CTACTATGAA TTCTAGATGG AAAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss6387306	AV144863_185	TWGNF	TWGNF-Mouse	f	SNP	T			C		C	C	C	C	C							C
ss45562262	mCV23503958	ABI	CRAMUS_MOUSE	r	SNP			A	G
ss47465746	NES10335929	PERLEGEN	MM_PANEL2	r	SNP		A		G	G	G	G		G	G	G	G	G	G	G	G		G
ss136114476	ENSMUSSNP1796577	ENSEMBL	ENSEMBL_Sanger	r	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs4224331					SNP	T	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6387306	AV144863_185	TWGNF	TWGNF-Mouse-2	f	SNP	C/T
ss47465746	NES10335929	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153562989 () rs orientation: reverse

Symbol	Name	Function Class
Msh4	mutS homolog 4	within coordinates