rs4224571 SNP Detail

Summary

• ID
  rs4224571
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  111
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:85307434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

     AGAGAAA CACTAGTAAG CATTTCCCAC TCCATAGAAC AAGACAGTGA GCATCGCTCC
  TTCCCACGTT TACTTGTTTG TGTTCCTTGA ACATCATTTG TGCATATTCT GCCCTCAATG
  AGGACCAAAT AAAGATGATT TTTGTGCTTA GCAGTTTAAG GTATGTGGCT GCATATGCAA
  ACCCCTTTTC CACTCCAGTC ATTACTTTGA ACGCCTCCCT TCCTCATTTT GTGTGTACAG
  TGCTGTGTAC GCTGATCAGT GTTGGGTTTT CGTTTTGTTC TCCTTTCAGT TATGGAAGTC
  Y
  CGATAGGCAC CCAGAGTTCT ATTTATCTAG CTGTACAGGC TCCTTCAGAG GTTTAGCGTG
  CTGCTTCCGA TATGCCACTT GCGGTAGTGG ATCGTGTGGA GTGAAAGGCA AATCTTCCTG
  CTTAATGTAT AAACTCACCA CGGGAAGCAC TGCTGTTTCC AATAAACATT GCTGAA    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	SPRET/EiJ
ss6387548	AI120490_298	TWGNF	TWGNF-Mouse	f	SNP	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	SPRET/EiJ
rs4224571					SNP	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6387548	AI120490_298	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:85307434 () rs orientation: forward

Symbol	Name	Function Class
Sh3gl2	SH3-domain GRB2-like 2	within coordinates
Tssr37714	transcription start site region 37714	1091 bp downstream
Tssr37715	transcription start site region 37715	1055 bp downstream
Tssr37716	transcription start site region 37716	958 bp downstream
Tssr37717	transcription start site region 37717	912 bp downstream
Tssr37718	transcription start site region 37718	375 bp downstream