rs4224573 SNP Detail

Summary

• ID
  rs4224573
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  111
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:85307527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                   AGAGAAACAC TAGTAAGCAT TTCCCACTCC
  ATAGAACAAG ACAGTGAGCA TCGCTCCTTC CCACGTTTAC TTGTTTGTGT TCCTTGAACA
  TCATTTGTGC ATATTCTGCC CTCAATGAGG ACCAAATAAA GATGATTTTT GTGCTTAGCA
  GTTTAAGGTA TGTGGCTGCA TATGCAAACC CCTTTTCCAC TCCAGTCATT ACTTTGAACG
  CCTCCCTTCC TCATTTTGTG TGTACAGTGC TGTGTACGCT GATCAGTGTT GGGTTTTCGT
  TTTGTTCTCC TTTCAGTTAT GGAAGTCCCG ATAGGCACCC AGAGTTCTAT TTATCTAGCT
  GTACAGGCTC CTTCAGAGGT TTAGCGTGCT GCTTCCGATA TGCCACTTGC GGTAGTGGAT
  R
  GTGTGGAGTG AAAGGCAAAT CTTCCTGCTT AATGTATAAA CTCACCACGG GAAGCACTGC
  TGTTTCCAAT AAACATTGCT GAA                                        
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	SPRET/EiJ
ss6387550	AI120490_391	TWGNF	TWGNF-Mouse	f	SNP	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	SPRET/EiJ
rs4224573					SNP	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6387550	AI120490_391	TWGNF	TWGNF-Mouse-2	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:85307527 () rs orientation: forward

Symbol	Name	Function Class
Sh3gl2	SH3-domain GRB2-like 2	within coordinates
Tssr37714	transcription start site region 37714	1184 bp downstream
Tssr37715	transcription start site region 37715	1148 bp downstream
Tssr37716	transcription start site region 37716	1051 bp downstream
Tssr37717	transcription start site region 37717	1005 bp downstream
Tssr37718	transcription start site region 37718	468 bp downstream