rs4224817 SNP Detail

Summary

• ID
  rs4224817
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133857467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGCC CCTCAGGCCC TGGAGGTCCA
  Y
  GGTGCTGTTA ACAGCCCCAA GGCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss6387797	AI173504_180	TWGNF	TWGNF-Mouse	f	SNP	C			C		C			C	T					C					C																						C
ss16375687	04.132.986	TWGNF	TWGNF-Mouse-2	f	SNP		C		C	C	C	C	C	C	T	T	T	T	T	C	C	C	T	T	C	C	C	T	T	C	C	C	T	T	T	C	T	C	C	C	T	C	C	T	C	C	T	T	C	C	C
ss45593533	mCV24805071	ABI	CRAMUS_MOUSE	f	SNP			C	C						T										C
ss147518554	ENSMUSSNP521607	ENSEMBL	ENSEMBL_Sanger	f	SNP			C	C																C
ss321345458	CHEV_4_133686071	CHEVERUD	SCREENING_POP	f	SNP																									C																C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs4224817					SNP	C	C	C	C	C	C	C	C	C	T	T	T	T	T	C	C	C	T	T	C	C	C	T	T	C	C	C	T	T	T	C	T	C	C	C	T	C	C	T	C	C	?	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6387797	AI173504_180	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133857467 () rs orientation: forward

Symbol	Name	Function Class
Cep85	centrosomal protein 85	within coordinates
Cpgi15028	CpG island 15028	1036 bp distal
Gm68742	predicted gene, 68742	545 bp upstream
Rr601575	regulatory region 601575	877 bp distal
Rr601576	regulatory region 601576	296 bp distal
Rr601577	regulatory region 601577	456 bp distal
Rr601578	regulatory region 601578	308 bp distal
Sh3bgrl3	SH3 domain binding glutamic acid-rich protein-like 3	1423 bp upstream
Tssr43875	transcription start site region 43875	1456 bp upstream
Tssr43876	transcription start site region 43876	1386 bp upstream
Tssr43877	transcription start site region 43877	545 bp upstream