rs4224819 SNP Detail

Summary

• ID
  rs4224819
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133857607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAA TAACCAGATA CAACTGAGAC
  R
  ATCCCTAAAT TGGGAGGCAA GAAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss6387799	AI173504_320	TWGNF	TWGNF-Mouse	f	SNP	A		A		A		A	G	G	A										G
ss37762641	NES09166381	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	A	A		G	A	A	G		G		A	A	G			A
ss45592941	mCV24805070	ABI	CRAMUS_MOUSE	f	SNP			A					G		A
ss147518559	ENSMUSSNP5863940	ENSEMBL	ENSEMBL_Sanger	f	SNP			A							A					G
ss321345459	CHEV_4_133686211	CHEVERUD	SCREENING_POP	f	SNP													A						A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs4224819					SNP	A	A	A	A	A	A	A	G	G	A	A	G	A	G	G	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6387799	AI173504_320	TWGNF	TWGNF-Mouse-2	f	SNP	A/G
ss37762641	NES09166381	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133857607 () rs orientation: forward

Symbol	Name	Function Class
Cep85	centrosomal protein 85	within coordinates
Cpgi15028	CpG island 15028	1176 bp distal
Gm68742	predicted gene, 68742	685 bp upstream
Rr601575	regulatory region 601575	1017 bp distal
Rr601576	regulatory region 601576	436 bp distal
Rr601577	regulatory region 601577	596 bp distal
Rr601578	regulatory region 601578	448 bp distal
Sh3bgrl3	SH3 domain binding glutamic acid-rich protein-like 3	1563 bp upstream
Tssr43875	transcription start site region 43875	1596 bp upstream
Tssr43876	transcription start site region 43876	1526 bp upstream
Tssr43877	transcription start site region 43877	685 bp upstream